I’m guessing that, narratively, the suit will start to take over Peter’s personality - having a choice as to whether or not you do that would tend to defeat the narrative purpose there. I suppose they could put you in situations where you need to use those powers even if you don’t want to, but that ends up feeling cheap and like a narrative cheat - like Ghost of Tsushima “encouraging” players to use ninja skills then just assuming that they did regardless of their actual choices.
It’s going to be strongly story focused. You use the suit powers that the story dictates.